A 16-year-old girl was raped and nearly killed Sunday after being thrown from the roof of a Brooklyn apartment building, police said.

Anwar Desouza, 24, and Antonio Owensford, 26, sexually assaulted her and tossed her off the roof in East New York, police said.

She was taken to Brookdale Hospital with leg, arm and neck injuries.

Desouza was charged with attempted murder, assault and rape. According to cops, Owensford is still on the loose.